STRINGSTRING
Solyc06g082940.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc06g082940.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc06g082940.2.1Uncharacterized protein (220 aa)    
Predicted Functional Partners:
Solyc02g069460.2.1
Uncharacterized protein (228 aa)
 
 
  0.992
Solyc02g069450.2.1
Uncharacterized protein (246 aa)
 
 
  0.992
psaD
Photosystem I reaction center subunit II, chloroplastic ; PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center. PSAD may encode the ferredoxin-docking protein (208 aa)
   
 
  0.987
Solyc06g083680.2.1
Uncharacterized protein (138 aa)
   
 
  0.975
Solyc09g063130.2.1
Uncharacterized protein (140 aa)
   
 
  0.975
Solyc10g017890.1.1
Uncharacterized protein (314 aa)
   
 
 
  0.956
Solyc12g033060.1.1
Uncharacterized protein (273 aa)
   
 
 
  0.956
Solyc07g021240.1.1
Uncharacterized protein (169 aa)
   
 
 
  0.954
Solyc07g021230.1.1
Uncharacterized protein (199 aa)
   
 
 
  0.951
Solyc10g017900.1.1
Uncharacterized protein (141 aa)
   
 
 
  0.950
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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