STRINGSTRING
Solyc07g005670.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g005670.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g005670.1.1Uncharacterized protein (272 aa)    
Predicted Functional Partners:
Solyc11g007080.1.1
Protein YIPF (252 aa)
     
 
  0.817
Solyc05g055300.1.1
Protein YIPF (251 aa)
     
 
  0.817
Solyc07g018230.1.1
Uncharacterized protein (112 aa)
     
 
  0.721
Solyc07g018220.2.1
Protein YIPF (278 aa)
     
 
  0.721
Solyc07g018210.2.1
Protein YIPF (278 aa)
     
 
  0.721
Rab1A
Small GTP-binding protein (203 aa)
     
 
  0.414
Solyc05g053940.2.1
Uncharacterized protein (203 aa)
     
 
  0.414
Rab1C
Small GTP-binding protein (203 aa)
     
 
  0.414
Rab1B
Small GTP-binding protein (202 aa)
     
 
  0.414
Solyc01g090170.2.1
Uncharacterized protein (203 aa)
     
 
  0.414
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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