STRINGSTRING
Solyc07g005890.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g005890.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g005890.2.1Uncharacterized protein (513 aa)    
Predicted Functional Partners:
Solyc03g120080.2.1
Uncharacterized protein (666 aa)
     
        0.948
Solyc02g088780.2.1
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (423 aa)
     
   
  0.921
Solyc01g111030.1.1
Ribosome biogenesis protein WDR12 homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (470 aa)
     
   
  0.921
Solyc09g083080.2.1
Uncharacterized protein (552 aa)
     
 
  0.897
Solyc05g055880.2.1
Uncharacterized protein (513 aa)
     
 
  0.897
Solyc05g008040.2.1
Uncharacterized protein (665 aa)
     
   
  0.891
Solyc05g008030.1.1
Uncharacterized protein (269 aa)
     
   
  0.891
Solyc02g094590.2.1
Uncharacterized protein (826 aa)
     
   
  0.891
Solyc09g007440.2.1
Uncharacterized protein (546 aa)
   
   
0.885
Solyc02g070100.2.1
Uncharacterized protein (585 aa)
   
 
0.880
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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