STRINGSTRING
Solyc07g006120.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g006120.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g006120.2.1Uncharacterized protein (365 aa)    
Predicted Functional Partners:
Solyc01g108160.2.1
Uncharacterized protein (2028 aa)
     
 
  0.963
Solyc04g008630.2.1
Uncharacterized protein (899 aa)
     
 
  0.949
Solyc12g049310.1.1
Ubiquitin-like protein ATG12 ; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation (90 aa)
       
  0.897
Solyc06g043140.2.1
Autophagy protein 5 ; Required for autophagy (340 aa)
     
  0.895
Solyc02g036380.2.1
Autophagy protein 5 ; Required for autophagy (418 aa)
     
  0.895
atg6
Hop-interacting protein THI040 (523 aa)
     
  0.867
Solyc11g068930.1.1
Uncharacterized protein (715 aa)
     
  0.862
Solyc06g034160.2.1
Autophagy-related protein 3 (313 aa)
     
  0.838
Solyc10g006270.2.1
Autophagy-related protein (147 aa)
     
  0.783
Solyc08g078820.2.1
Autophagy 8f (198 aa)
     
  0.783
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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