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LeVP1 protein (Solanum lycopersicum) - STRING interaction network
"LeVP1" - Vacuolar-type H+-pyrophosphatase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LeVP1Vacuolar-type H+-pyrophosphatase (765 aa)    
Predicted Functional Partners:
NHX1
Sodium/hydrogen exchanger (534 aa)
     
   
  0.916
nhx4
Sodium/hydrogen exchanger (536 aa)
     
   
  0.497
nhx3
Sodium/hydrogen exchanger (537 aa)
     
   
  0.497
sos1
Na+/H+ antiporter (1151 aa)
     
   
  0.476
Solyc04g056540.2.1
Uncharacterized protein (603 aa)
              0.465
Solyc11g073160.1.1
Uncharacterized protein (482 aa)
              0.456
Solyc11g010300.1.1
Uncharacterized protein (551 aa)
              0.456
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
           
  0.456
Solyc04g016010.2.1
Uncharacterized protein (537 aa)
           
  0.456
ribA
GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone-4-phosphate synthase (552 aa)
              0.456
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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