STRINGSTRING
Solyc07g007700.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g007700.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g007700.1.1Uncharacterized protein (400 aa)    
Predicted Functional Partners:
Solyc01g094930.2.1
Uncharacterized protein (424 aa)
     
 
  0.550
Solyc09g009630.2.1
Uncharacterized protein (318 aa)
       
 
  0.545
FTB
Farnesyl-protein transferase beta subunit (457 aa)
           
  0.471
FTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha ; Essential subunit of both the farnesyltransferase and the geranylgeranyltransferase complex. Contributes to the transfer of a farnesyl or geranylgeranyl moiety from farnesyl or geranylgeranyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X (346 aa)
           
  0.468
Solyc05g054520.2.1
Uncharacterized protein (368 aa)
           
  0.416
Solyc12g098870.1.1
Uncharacterized protein (1312 aa)
     
   
  0.407
Solyc12g098840.1.1
Uncharacterized protein (1280 aa)
     
   
  0.407
Solyc12g049130.1.1
Uncharacterized protein (107 aa)
     
   
  0.407
Solyc12g049120.1.1
Uncharacterized protein (348 aa)
     
   
  0.407
Solyc11g067310.1.1
Uncharacterized protein (1289 aa)
     
   
  0.407
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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