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STRINGSTRING
Solyc07g007850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g007850.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g007850.2.1annotation not available (475 aa)    
Predicted Functional Partners:
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.871
cdc5
CDC5-like protein (987 aa)
     
 
  0.865
Solyc06g053590.2.1
annotation not available (599 aa)
     
      0.798
Solyc06g053570.2.1
annotation not available (781 aa)
     
      0.798
Solyc12g088950.1.1
annotation not available (661 aa)
     
 
  0.791
RPD1
Uncharacterized protein; DNA-directed RNA polymerase (1206 aa)
     
 
  0.791
101249466
annotation not available (467 aa)
     
 
  0.791
RPB1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1846 aa)
     
 
  0.791
Solyc02g083240.2.1
annotation not available (115 aa)
     
 
  0.791
Solyc02g083230.2.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (264 aa)
     
 
  0.791
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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