STRINGSTRING
Solyc07g008000.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g008000.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g008000.2.1Uncharacterized protein (678 aa)    
Predicted Functional Partners:
Solyc00g042130.1.1
Annotation not available (704 aa)
     
 
  0.903
atpB
ATP synthase subunit beta, chloroplastic ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (609 aa)
       
      0.902
Solyc00g042140.1.1
Annotation not available (399 aa)
       
      0.902
Solyc04g072060.2.1
Uncharacterized protein (204 aa)
       
 
  0.739
Solyc04g051680.2.1
Uncharacterized protein (219 aa)
       
 
  0.739
Solyc03g120750.2.1
Uncharacterized protein (205 aa)
       
 
  0.739
Solyc01g109520.2.1
Uncharacterized protein (206 aa)
       
 
  0.739
Solyc06g073270.2.1
Golgi apparatus membrane protein TVP23 ; Golgi membrane protein involved in vesicular trafficking (183 aa)
     
      0.609
Solyc12g055760.1.1
Uncharacterized protein (70 aa)
       
      0.565
Solyc06g063220.2.1
Uncharacterized protein (70 aa)
       
      0.565
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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