• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc07g008500.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g008500.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g008500.1.1annotation not available (288 aa)    
Predicted Functional Partners:
Solyc06g010200.2.1
annotation not available (1613 aa)
     
 
  0.857
Solyc11g008150.1.1
Uncharacterized protein; Kow domain-containing transcription factor 1 (1509 aa)
     
 
  0.836
101260813
annotation not available (1040 aa)
     
 
  0.836
101248675
annotation not available (319 aa)
       
 
  0.832
Solyc07g006820.2.1
annotation not available (1823 aa)
     
   
  0.810
Solyc03g115240.2.1
Leo1-like family protein (622 aa)
     
 
  0.802
101256389
Uncharacterized protein; COSII_At1g32130 (523 aa)
     
 
  0.800
101248963
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex (116 aa)
       
 
  0.775
Solyc03g059420.2.1
Sister chromatid cohesion protein; PHD finger family protein (1620 aa)
     
   
  0.743
Solyc03g059400.1.1
annotation not available (86 aa)
     
   
  0.743
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (8%) [HD]