STRINGSTRING
Solyc07g008530.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g008530.1.1" - Tyrosyl-tRNA synthetase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g008530.1.1Tyrosyl-tRNA synthetase (521 aa)    
Predicted Functional Partners:
Solyc01g109360.2.1
Uncharacterized protein (328 aa)
     
  0.871
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
   
   
  0.813
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
 
  0.800
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
   
   
  0.732
Solyc05g009220.2.1
Uncharacterized protein (790 aa)
   
   
  0.691
Solyc09g008130.2.1
Phosphoglycerate kinase (683 aa)
   
   
  0.672
Solyc11g039830.1.1
Uncharacterized protein (738 aa)
   
   
  0.649
Solyc03g118170.2.1
Uncharacterized protein (621 aa)
   
   
  0.649
Solyc01g112290.2.1
Uncharacterized protein (570 aa)
   
   
  0.641
Solyc01g102410.2.1
Uncharacterized protein (740 aa)
   
   
  0.638
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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