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STRINGSTRING
Solyc07g017250.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g017250.2.1" - annotation not available in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g017250.2.1annotation not available (196 aa)    
Predicted Functional Partners:
101249926
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit; Belongs to the WD repeat TRM82 family (434 aa)
     
 
  0.854
Solyc07g056550.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 475 Blast hits to 467 proteins in 210 species- Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source- NCBI BLink) (398 aa)
     
        0.848
ER49
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (391 aa)
   
 
  0.780
101245558
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1048 aa)
   
 
  0.780
101263184
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly (329 aa)
     
        0.776
101250451
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.748
Solyc11g066280.1.1
Ribosomal RNA processing Brix domain protein (335 aa)
     
        0.732
Solyc02g088780.2.1
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (423 aa)
     
 
  0.730
Solyc01g111030.1.1
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (470 aa)
     
 
  0.730
101268074
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
     
   
  0.722
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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