STRINGSTRING
VIN3 protein (Solanum lycopersicum) - STRING interaction network
"VIN3" - Vernalization insensitive 3 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIN3Vernalization insensitive 3 (739 aa)    
Predicted Functional Partners:
MFP1
MAR-binding filament-like protein 1 ; Binds DNA. Interacts with chromatin via matrix attachment regions (MARs). Likely to participate in nuclear architecture by connecting chromatin with the nuclear matrix and potentially with the nuclear envelope (717 aa)
           
  0.699
Solyc05g018390.2.1
Uncharacterized protein (647 aa)
       
 
0.636
Fad7
Omega-3 fatty acid desaturase (435 aa)
           
  0.513
GAI
DELLA protein GAI ; Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination (588 aa)
           
  0.463
Solyc08g068540.2.1
Uncharacterized protein (499 aa)
           
  0.457
Solyc07g054630.2.1
Uncharacterized protein (578 aa)
           
  0.457
Solyc12g042440.1.1
Uncharacterized protein (547 aa)
           
  0.455
Solyc03g117930.2.1
Uncharacterized protein (588 aa)
           
  0.455
LHP1
Chromo domain protein LHP1 ; Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at ’Lys-9’, leading to epigenetic repression (399 aa)
           
  0.416
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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