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PEPD protein (Solanum lycopersicum) - STRING interaction network
"PEPD" - xaa-Pro dipeptidase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPDxaa-Pro dipeptidase (222 aa)    
Predicted Functional Partners:
SAP8
Stress-associated protein 8 (151 aa)
           
  0.912
Solyc12g038920.1.1
Uncharacterized protein (335 aa)
       
      0.900
Solyc06g069330.2.1
Uncharacterized protein (342 aa)
       
      0.900
Solyc03g114590.2.1
Uncharacterized protein (342 aa)
       
      0.900
Solyc05g012090.2.1
Dihydropterin pyrophosphokinase-dihydropteroate synthase (512 aa)
   
   
  0.672
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
         
  0.624
Solyc03g115630.2.1
Uncharacterized protein (426 aa)
   
      0.596
Solyc01g108600.2.1
Uncharacterized protein (1072 aa)
   
      0.571
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
 
  0.516
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.500
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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