STRINGSTRING
Solyc07g039330.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g039330.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g039330.2.1Uncharacterized protein (377 aa)    
Predicted Functional Partners:
Solyc02g068580.1.1
Uncharacterized protein (468 aa)
     
  0.973
RBR1
Retinoblastoma-related protein 1 (1018 aa)
     
  0.971
Solyc11g067020.1.1
Histone deacetylase (430 aa)
     
  0.968
Solyc09g091440.2.1
Histone deacetylase (498 aa)
     
  0.968
Solyc06g071680.2.1
Histone deacetylase (471 aa)
     
  0.968
Solyc03g112410.1.1
Histone deacetylase (449 aa)
     
  0.968
FIE
Fertilization-independent endosperm protein (372 aa)
     
  0.967
Solyc12g098160.1.1
Uncharacterized protein (1140 aa)
     
  0.957
Solyc01g067560.2.1
Uncharacterized protein (1209 aa)
     
  0.957
Solyc11g005800.1.1
Uncharacterized protein (448 aa)
     
 
  0.948
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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