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STRINGSTRING
101259556 protein (Solanum lycopersicum) - STRING interaction network
"101259556" - Unknown protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101259556Unknown protein; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF2838 (InterPro-IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukary /.../ 339 (source- NCBI BLink) (371 aa)    
Predicted Functional Partners:
Solyc05g007060.2.1
Unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G27030.1); Has 540 Blast h /.../ 538 proteins in 187 species- Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source- NCBI BLink) (327 aa)
           
  0.851
101263645
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (1012 aa)
           
  0.833
Solyc04g049620.2.1
annotation not available (178 aa)
           
  0.742
Solyc04g049580.2.1
annotation not available (210 aa)
           
  0.742
Solyc09g091990.2.1
annotation not available (390 aa)
       
 
  0.638
101254224
annotation not available (363 aa)
           
  0.632
101262151
Uncharacterized protein; Proteolysis 1 (442 aa)
       
      0.626
Solyc04g080870.1.1
annotation not available (86 aa)
       
      0.626
Solyc03g115720.2.1
Uncharacterized protein; Zinc finger (C3HC4-type RING finger) family protein (439 aa)
       
      0.626
101252035
annotation not available (374 aa)
       
      0.626
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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