STRINGSTRING
Solyc07g041300.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g041300.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g041300.1.1Uncharacterized protein (319 aa)    
Predicted Functional Partners:
ODC
Ornithine decarboxylase (431 aa)
   
  0.748
Solyc03g098310.1.1
Uncharacterized protein (397 aa)
   
  0.748
Solyc03g098300.1.1
Uncharacterized protein (388 aa)
   
  0.748
Solyc01g109850.2.1
Uncharacterized protein (480 aa)
   
  0.748
Solyc10g038080.1.1
Uncharacterized protein (514 aa)
     
 
  0.744
LOC543548
Dehydroquinate dehydratase/shikimate-NADP oxidoreductase (545 aa)
     
 
  0.744
CPA
N-carbamoylputrescine amidase ; Involved in polyamine biosynthesis (300 aa)
   
 
  0.692
Solyc06g054460.1.1
S-adenosylmethionine decarboxylase proenzyme (338 aa)
     
 
  0.640
SAMDC
S-adenosylmethionine decarboxylase proenzyme (360 aa)
     
 
  0.640
Solyc02g089610.1.1
S-adenosylmethionine decarboxylase proenzyme (362 aa)
     
 
  0.640
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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