• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc07g043580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g043580.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g043580.2.1annotation not available (495 aa)    
Predicted Functional Partners:
Solyc01g102300.2.1
Uncharacterized protein; Phytochrome interacting factor 3 (715 aa)
     
0.942
phyA
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
       
 
  0.937
104648378
annotation not available (104 aa)
       
 
  0.895
Solyc06g069690.2.1
annotation not available (502 aa)
     
 
  0.869
Solyc03g115770.2.1
annotation not available (552 aa)
     
 
  0.869
101268174
annotation not available (722 aa)
       
 
  0.831
101245619
annotation not available (603 aa)
       
 
  0.831
101267430
annotation not available (644 aa)
       
 
  0.831
101265040
BEST Arabidopsis thaliana protein match is- hydroxyproline-rich glycoprotein family protein (TAIR-AT2G25930.1); Has 63 Blast hits to 58 proteins in 21 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryo /.../2 (source- NCBI BLink) (602 aa)
       
 
  0.831
LOC544232
Mature anther-specific protein LAT61 (333 aa)
       
 
  0.816
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]