• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
101250522 protein (Solanum lycopersicum) - STRING interaction network
"101250522" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101250522annotation not available (155 aa)    
Predicted Functional Partners:
101246470
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAIN /.../rPro DOMAIN/s- Protein of unknown function DUF3769 (InterPro-IPR022244); BEST Arabidopsis thaliana protein match is- pigment defective 320 (TAIR-AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source- [...] (458 aa)
           
  0.837
101266979
annotation not available (154 aa)
         
 
0.800
101250913
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (899 aa)
         
    0.800
101259439
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (636 aa)
         
    0.800
Solyc05g005510.2.1
Nucleic acid-binding, OB-fold-like protein (97 aa)
         
 
0.800
101255870
Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses (614 aa)
         
    0.800
101260102
annotation not available (159 aa)
         
 
0.800
101257149
annotation not available (260 aa)
     
   
  0.745
101250442
annotation not available (194 aa)
           
  0.668
101253367
Chloroplast At1g16080 protein (302 aa)
           
  0.514
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (15%) [HD]