STRINGSTRING
Solyc07g054280.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g054280.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g054280.1.1Uncharacterized protein (504 aa)    
Predicted Functional Partners:
Solyc10g076250.1.1
Uncharacterized protein (478 aa)
   
  0.721
Solyc04g054310.2.1
Mitochondrial alanine-glyoxylate transaminase (473 aa)
   
  0.721
Solyc08g068620.1.1
Uncharacterized protein (349 aa)
   
     
  0.513
Solyc03g113780.2.1
Uncharacterized protein (529 aa)
   
   
  0.496
Solyc03g113770.2.1
Uncharacterized protein (471 aa)
   
   
  0.496
AADC1A
Aromatic amino acid decarboxylase 1A (471 aa)
   
     
  0.494
Solyc08g068630.2.1
Uncharacterized protein (476 aa)
   
     
  0.494
Solyc08g081150.2.1
Uncharacterized protein (536 aa)
         
  0.480
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
           
  0.463
Solyc12g006290.1.1
Reticulon-like protein (233 aa)
     
        0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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