STRINGSTRING
Solyc07g054690.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc07g054690.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc07g054690.1.1Uncharacterized protein (473 aa)    
Predicted Functional Partners:
Solyc03g061600.2.1
Uncharacterized protein (651 aa)
       
      0.988
Solyc06g072830.2.1
Uncharacterized protein (455 aa)
     
      0.967
cdc20-1
Cell division control 20-1 (453 aa)
     
      0.967
Solyc12g056490.1.1
Uncharacterized protein (481 aa)
       
      0.902
ccs52A
Protein FIZZY-RELATED 2 (481 aa)
       
      0.902
ccs52B
Cell cycle switch 52B (499 aa)
       
      0.902
Solyc03g061590.2.1
Uncharacterized protein (181 aa)
       
      0.902
Solyc08g005420.2.1
Uncharacterized protein (448 aa)
       
      0.800
Solyc12g088570.1.1
Uncharacterized protein (364 aa)
       
      0.598
Solyc12g038530.1.1
Uncharacterized protein (298 aa)
       
      0.598
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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