STRINGSTRING
lanceolate protein (Solanum lycopersicum) - STRING interaction network
"lanceolate" - Lanceolate in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lanceolateLanceolate (400 aa)    
Predicted Functional Partners:
KN1
Homeotic protein knotted-1 ; Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5’-TGAC-3’ (355 aa)
           
  0.912
T6
Homeobox protein knotted-1-like LET6 ; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)
           
  0.703
NAM
Goblet; NO APICAL MERISTEM (352 aa)
           
  0.696
VAHOX1
Homeobox (323 aa)
           
  0.695
GA2ox4
Gibberellin 2-oxidase (331 aa)
           
  0.693
matriochka
Mini zinc finger protein (90 aa)
           
  0.691
Solyc12g011200.1.1
Uncharacterized protein (335 aa)
       
      0.546
Solyc07g056280.2.1
Uncharacterized protein (322 aa)
       
      0.546
fasciated
FAS protein (177 aa)
           
  0.516
Solyc10g078700.1.1
Uncharacterized protein (372 aa)
           
  0.512
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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