STRINGSTRING
Ls protein (Solanum lycopersicum) - STRING interaction network
"Ls" - Lateral suppressor in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LsLateral suppressor; Lateral suppressor protein (428 aa)    
Predicted Functional Partners:
J
MADS-box protein JOINTLESS ; Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state (265 aa)
           
  0.700
wus
Protein WUSCHEL ; Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity) (272 aa)
           
  0.699
LOC778199
Putative uncharacterized protein (739 aa)
           
  0.693
LOC606305
Putative uncharacterized protein (750 aa)
           
  0.693
LOC543703
Blind (315 aa)
           
  0.690
NAM
Goblet; NO APICAL MERISTEM (352 aa)
           
  0.575
CCD7
Carotenoid cleavage dioxygenase 7 (663 aa)
           
  0.429
Bs4
Bacterial spot disease resistance protein 4 (1146 aa)
           
  0.416
TCP9
BRANCHED1A isoform 1 (346 aa)
           
  0.406
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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