STRINGSTRING
Solyc08g005260.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g005260.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g005260.1.1Uncharacterized protein (361 aa)    
Predicted Functional Partners:
Solyc08g079100.2.1
Uncharacterized protein (216 aa)
           
  0.489
Solyc01g091010.2.1
Uncharacterized protein (218 aa)
           
  0.489
Solyc11g069470.1.1
Uncharacterized protein (841 aa)
           
  0.483
Solyc11g008830.1.1
Uncharacterized protein (230 aa)
           
  0.480
LOC543604
Phantastica (360 aa)
           
  0.459
ARF3
Auxin response factor 3 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (747 aa)
           
  0.459
ARF4
Auxin response factor 4 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (811 aa)
           
  0.457
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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