STRINGSTRING
Solyc08g005280.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g005280.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g005280.1.1Uncharacterized protein (1137 aa)    
Predicted Functional Partners:
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
   
  0.513
ETR6
Ethylene receptor (754 aa)
   
   
  0.485
Solyc07g005110.2.1
Uncharacterized protein (748 aa)
       
  0.456
Solyc10g007420.2.1
Uncharacterized protein (425 aa)
         
  0.455
Solyc10g007240.1.1
Uncharacterized protein (594 aa)
         
  0.455
Solyc10g007230.1.1
Uncharacterized protein (596 aa)
         
  0.455
Solyc06g048620.2.1
Uncharacterized protein (971 aa)
   
  0.455
Solyc09g015170.2.1
Uncharacterized protein (788 aa)
   
  0.453
Solyc04g081080.1.1
Non-specific serine/threonine protein kinase (1136 aa)
   
  0.452
Solyc03g033610.1.1
Non-specific serine/threonine protein kinase (1128 aa)
   
  0.452
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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