STRINGSTRING
Solyc08g005440.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g005440.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g005440.2.1Uncharacterized protein (931 aa)    
Predicted Functional Partners:
Solyc09g059430.2.1
Uncharacterized protein (254 aa)
       
  0.961
Solyc09g011060.2.1
Clade IV lectin receptor kinase (832 aa)
     
  0.830
Solyc12g098440.1.1
Uncharacterized protein (313 aa)
       
    0.808
Solyc06g083390.2.1
Uncharacterized protein (250 aa)
       
    0.808
Solyc11g012010.1.1
Uncharacterized protein (224 aa)
         
    0.800
Solyc07g039550.2.1
Uncharacterized protein (1190 aa)
       
  0.742
Solyc01g110990.2.1
Uncharacterized protein (1111 aa)
       
  0.742
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
       
  0.719
Solyc09g064420.2.1
Uncharacterized protein (775 aa)
       
 
  0.712
CNOT1
CCR4-NOT transcription complex subunit 1 (2411 aa)
     
  0.694
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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