STRINGSTRING
Solyc08g005540.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g005540.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g005540.1.1Uncharacterized protein (530 aa)    
Predicted Functional Partners:
Solyc11g040390.1.1
Uncharacterized protein (819 aa)
     
 
  0.941
Solyc06g064550.2.1
Uncharacterized protein (919 aa)
     
 
  0.941
Solyc05g007070.2.1
Alpha-amylase (892 aa)
       
  0.678
Solyc04g082090.2.1
Alpha-amylase (407 aa)
       
  0.678
Solyc04g078930.2.1
Alpha-amylase (407 aa)
       
  0.678
Solyc03g095710.2.1
Alpha-amylase (453 aa)
       
  0.678
Solyc02g066950.2.1
Uncharacterized protein (905 aa)
       
  0.678
Solyc12g035190.1.1
Uncharacterized protein (386 aa)
       
 
  0.585
Solyc06g071550.2.1
Uncharacterized protein (401 aa)
       
 
  0.585
Solyc04g025540.2.1
Uncharacterized protein (583 aa)
       
 
  0.585
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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