• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc08g005580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g005580.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g005580.2.1annotation not available (655 aa)    
Predicted Functional Partners:
101247486
Uncharacterized protein; Copper transporter 5 (149 aa)
           
  0.562
101247065
annotation not available (555 aa)
     
   
  0.537
101260056
annotation not available (495 aa)
     
   
  0.537
Solyc06g054110.1.1
annotation not available (170 aa)
     
   
  0.537
Solyc06g054100.1.1
annotation not available (122 aa)
     
   
  0.537
101260288
O-methyltransferase family protein (361 aa)
           
  0.457
Solyc02g044050.1.1
Non-intrinsic ABC protein 5; Belongs to the RNA polymerase beta chain family (491 aa)
     
 
  0.448
Solyc06g072090.1.1
annotation not available (660 aa)
   
 
 
0.423
Solyc06g072100.1.1
annotation not available (715 aa)
   
 
 
0.419
101260318
annotation not available (697 aa)
           
  0.418
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]