STRINGSTRING
Solyc08g007080.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g007080.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g007080.2.1Uncharacterized protein (619 aa)    
Predicted Functional Partners:
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
       
      0.805
ER43
Ethylene-responsive small GTP-binding protein (216 aa)
       
      0.645
Solyc10g086350.1.1
Uncharacterized protein (216 aa)
       
      0.645
Solyc09g010370.2.1
Uncharacterized protein (216 aa)
       
      0.645
Solyc06g005350.2.1
Uncharacterized protein (144 aa)
       
      0.645
ypt2
GTP-binding protein (216 aa)
       
      0.645
Solyc10g076590.1.1
Uncharacterized protein (363 aa)
     
  0.635
Solyc10g076580.1.1
Uncharacterized protein (190 aa)
     
  0.635
Solyc02g082770.2.1
Uncharacterized protein (202 aa)
     
  0.635
Solyc02g082750.2.1
Uncharacterized protein (594 aa)
 
 
  0.635
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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