Solyc08g007520.2.1 protein (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Solyc08g007520.2.1

Uncharacterized protein (330 aa)

Predicted Functional Partners:

Solyc08g066700.2.1

0.999

Solyc09g074090.2.1

0.998

Solyc01g095480.2.1

0.998

Solyc06g071460.2.1

0.997

Solyc04g050480.2.1

0.996

Solyc05g047420.2.1

0.995

Solyc10g018520.1.1

0.986

Solyc07g052340.2.1

0.985

Solyc07g008750.2.1

0.985

Solyc06g064740.2.1

0.985

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g095480.2.1	Solyc04g050480.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc01g095480.2.1	Solyc05g047420.2.1	Uncharacterized protein	Uncharacterized protein	0.998
Solyc01g095480.2.1	Solyc06g064740.2.1	Uncharacterized protein	Uncharacterized protein	0.961
Solyc01g095480.2.1	Solyc06g071460.2.1	Uncharacterized protein	Uncharacterized protein	0.997
Solyc01g095480.2.1	Solyc07g008750.2.1	Uncharacterized protein	Uncharacterized protein	0.961
Solyc01g095480.2.1	Solyc07g052340.2.1	Uncharacterized protein	Uncharacterized protein	0.988
Solyc01g095480.2.1	Solyc08g007520.2.1	Uncharacterized protein	Uncharacterized protein	0.998
Solyc01g095480.2.1	Solyc08g066700.2.1	Uncharacterized protein	Uncharacterized protein	0.990
Solyc01g095480.2.1	Solyc09g074090.2.1	Uncharacterized protein	Uncharacterized protein	0.998
Solyc01g095480.2.1	Solyc10g018520.1.1	Uncharacterized protein	Uncharacterized protein	0.987
Solyc04g050480.2.1	Solyc01g095480.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc04g050480.2.1	Solyc05g047420.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc04g050480.2.1	Solyc06g064740.2.1	Uncharacterized protein	Uncharacterized protein	0.985
Solyc04g050480.2.1	Solyc06g071460.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc04g050480.2.1	Solyc07g008750.2.1	Uncharacterized protein	Uncharacterized protein	0.985
Solyc04g050480.2.1	Solyc07g052340.2.1	Uncharacterized protein	Uncharacterized protein	0.987
Solyc04g050480.2.1	Solyc08g007520.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc04g050480.2.1	Solyc08g066700.2.1	Uncharacterized protein	Uncharacterized protein	0.995
Solyc04g050480.2.1	Solyc09g074090.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc04g050480.2.1	Solyc10g018520.1.1	Uncharacterized protein	Uncharacterized protein	0.986

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