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Solyc08g007520.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g007520.2.1" - 3'-5'-exoribonuclease family protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g007520.2.13’-5’-exoribonuclease family protein (330 aa)    
Predicted Functional Partners:
101250449
3’-5’-exoribonuclease family protein (243 aa)
 
 
  0.999
101267058
Uncharacterized protein; Ribosomal RNA processing 4 (325 aa)
   
 
  0.999
101256312
Ribosomal protein S5 domain 2-like superfamily protein (232 aa)
   
 
  0.999
Solyc06g071460.2.1
annotation not available (238 aa)
   
 
  0.999
101246918
Nucleic acid-binding, OB-fold-like protein (200 aa)
     
 
  0.998
101263517
annotation not available (443 aa)
   
 
0.996
101243936
annotation not available (861 aa)
     
 
  0.965
Solyc07g052340.2.1
Uncharacterized protein; Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (884 aa)
     
 
  0.965
Solyc07g008750.2.1
annotation not available (226 aa)
     
 
  0.964
Solyc06g064740.2.1
annotation not available (116 aa)
     
 
  0.964
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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