STRINGSTRING
Solyc08g008000.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g008000.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g008000.1.1Uncharacterized protein (600 aa)    
Predicted Functional Partners:
Solyc01g098550.2.1
Uncharacterized protein (347 aa)
     
 
  0.928
Solyc12g098490.1.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (471 aa)
     
 
  0.924
Solyc12g095930.1.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (527 aa)
     
 
  0.924
Solyc08g065490.2.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (524 aa)
     
 
  0.924
Solyc05g053810.2.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (471 aa)
     
 
  0.924
Solyc04g076790.2.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (517 aa)
     
 
  0.924
Solyc02g091560.2.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (518 aa)
     
 
  0.924
Solyc01g104000.2.1
Serine hydroxymethyltransferase ; Interconversion of serine and glycine (594 aa)
     
 
  0.924
Solyc10g083540.1.1
Threonine deaminase (592 aa)
   
   
 
0.917
Solyc10g083760.1.1
Chloroplast threonine deaminase 1 (606 aa)
   
   
 
0.916
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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