STRINGSTRING
Solyc08g008040.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g008040.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g008040.2.1Uncharacterized protein (203 aa)    
Predicted Functional Partners:
Solyc02g069950.2.1
KRR-R motif-containing protein 1 ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (382 aa)
     
  0.981
Solyc07g047670.2.1
Pescadillo homolog ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (603 aa)
     
 
    0.956
Solyc07g064350.1.1
Uncharacterized protein (618 aa)
     
 
  0.951
Solyc10g009070.2.1
Uncharacterized protein (785 aa)
     
        0.948
Solyc09g075030.2.1
Uncharacterized protein (196 aa)
     
        0.948
Solyc04g076560.2.1
Uncharacterized protein (313 aa)
     
        0.948
Solyc01g109990.2.1
Uncharacterized protein (1012 aa)
     
        0.948
Solyc01g006170.2.1
Uncharacterized protein (288 aa)
     
        0.948
Solyc01g006090.2.1
Uncharacterized protein (282 aa)
     
        0.948
Solyc01g005810.2.1
Uncharacterized protein (302 aa)
     
        0.948
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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