STRINGSTRING
Solyc08g008120.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g008120.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g008120.2.1Uncharacterized protein (93 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
       
 
  0.966
Solyc02g070460.2.1
Uncharacterized protein (802 aa)
       
      0.939
cul4
Cullin 4 (785 aa)
       
      0.939
Det1
Light-mediated development protein DET1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (523 aa)
       
      0.897
Solyc09g074680.2.1
Uncharacterized protein (740 aa)
       
      0.774
Solyc09g010050.1.1
Uncharacterized protein (735 aa)
       
      0.774
Solyc06g084520.2.1
Uncharacterized protein (740 aa)
       
      0.774
Solyc06g008710.1.1
Uncharacterized protein (743 aa)
       
      0.774
Solyc06g008080.1.1
Uncharacterized protein (306 aa)
       
      0.774
Solyc05g018040.1.1
Uncharacterized protein (251 aa)
       
      0.774
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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