STRINGSTRING
Solyc08g008130.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g008130.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g008130.2.1Uncharacterized protein (883 aa)    
Predicted Functional Partners:
Solyc12g088680.1.1
Uncharacterized protein (160 aa)
     
  0.972
Solyc03g044260.2.1
Uncharacterized protein (160 aa)
     
  0.972
Solyc02g093110.2.1
Uncharacterized protein (160 aa)
     
  0.972
Solyc07g021660.1.1
Uncharacterized protein (138 aa)
     
  0.972
Solyc04g078620.2.1
Uncharacterized protein (160 aa)
     
  0.972
Solyc03g112720.2.1
Uncharacterized protein (149 aa)
     
  0.972
Solyc12g006010.1.1
Uncharacterized protein (99 aa)
       
  0.971
Solyc09g091890.2.1
Uncharacterized protein (91 aa)
       
  0.971
sumo
SUMO protein (105 aa)
       
  0.971
Solyc07g064880.2.1
Small ubiquitin-related modifier (99 aa)
       
  0.971
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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