STRINGSTRING
Solyc08g014240.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g014240.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g014240.2.1Uncharacterized protein (414 aa)    
Predicted Functional Partners:
Solyc09g090900.2.1
Uncharacterized protein (505 aa)
 
  0.901
Solyc03g005730.2.1
Uncharacterized protein (509 aa)
 
  0.900
Solyc05g009030.2.1
3-isopropylmalate dehydrogenase ; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (406 aa)
 
  0.839
Solyc06g060790.1.1
Uncharacterized protein (256 aa)
 
 
  0.807
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
   
 
  0.801
Solyc08g077930.2.1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (367 aa)
   
  0.777
Solyc08g077920.2.1
Isocitrate dehydrogenase [NAD] subunit, mitochondrial (367 aa)
   
  0.777
Solyc12g056940.1.1
Uncharacterized protein (2210 aa)
   
 
  0.758
Solyc12g043020.1.1
Uncharacterized protein (615 aa)
 
 
  0.754
Solyc05g053540.2.1
Uncharacterized protein (611 aa)
 
 
  0.754
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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