STRINGSTRING
Solyc08g016670.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g016670.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g016670.2.1Uncharacterized protein (219 aa)    
Predicted Functional Partners:
Solyc06g065230.2.1
Uncharacterized protein (174 aa)
     
      0.736
Solyc10g078930.1.1
Uncharacterized protein (351 aa)
     
   
  0.725
Solyc09g057920.2.1
Uncharacterized protein (509 aa)
     
      0.625
Solyc09g057910.2.1
Uncharacterized protein (544 aa)
     
      0.625
Solyc11g042930.1.1
Uncharacterized protein (155 aa)
     
 
  0.510
Solyc11g008420.1.1
Uncharacterized protein (189 aa)
     
 
  0.510
Solyc11g008400.1.1
Uncharacterized protein (180 aa)
     
 
  0.510
SSK3
SKP1-like protein 11-like (158 aa)
     
 
  0.510
SSK2
SKP1-like protein 11-like (158 aa)
     
 
  0.510
Solyc10g055610.1.1
Uncharacterized protein (150 aa)
     
 
  0.510
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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