STRINGSTRING
GPS protein (Solanum lycopersicum) - STRING interaction network
"GPS" - Geranyl pyrophosphate synthase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPSGeranyl pyrophosphate synthase (415 aa)    
Predicted Functional Partners:
IPI
Isopentenyl diphosphate isomerase (235 aa)
   
 
  0.963
IPI2
Plastid isopentenyl diphosphate isomerase (294 aa)
   
 
  0.963
FPS1
Farnesyl pyrophosphate synthase (342 aa)
         
  0.961
Solyc01g109300.2.1
ISPH protein (461 aa)
   
 
  0.952
Solyc10g005840.2.1
Uncharacterized protein (248 aa)
         
  0.941
Solyc10g005820.1.1
Uncharacterized protein (119 aa)
         
  0.941
MDC
Mevalonate disphosphate decarboxylase (422 aa)
   
 
  0.923
Solyc04g009650.2.1
Uncharacterized protein (418 aa)
   
 
  0.923
GGPS1
Geranylgeranyl pyrophosphate synthase 1 (365 aa)
   
   
0.919
Solyc02g085700.1.1
Geranylgeranyl pyrophosphate synthetase-like protein (360 aa)
   
   
0.919
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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