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STRINGSTRING
GPS protein (Solanum lycopersicum) - STRING interaction network
"GPS" - Geranyl pyrophosphate synthase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPSGeranyl pyrophosphate synthase ; Belongs to the FPP/GGPP synthase family (415 aa)    
Predicted Functional Partners:
101261961
Mevalonate kinase (392 aa)
   
   
  0.970
DXR
Uncharacterized protein; 1-deoxy-D-xylulose-5-phosphate reductoisomerase (475 aa)
   
 
  0.969
100316901
ISPH protein (461 aa)
   
  0.961
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol (400 aa)
   
   
  0.959
101246365
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Isoprenoid F (256 aa)
     
   
  0.959
IPI
Isopentenyl diphosphate isomerase (235 aa)
   
 
  0.950
IDI1
Plastid isopentenyl diphosphate isomerase (294 aa)
   
 
  0.950
MDC
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids (422 aa)
   
 
  0.948
Solyc04g009650.2.1
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids (418 aa)
   
 
  0.948
101257828
Putative protease/hydrolase (753 aa)
   
   
  0.945
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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