STRINGSTRING
Solyc08g023580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g023580.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g023580.2.1Uncharacterized protein (203 aa)    
Predicted Functional Partners:
Solyc04g056290.2.1
Uncharacterized protein (369 aa)
     
  0.981
Solyc01g105240.2.1
Uncharacterized protein (366 aa)
     
  0.981
Solyc10g086070.1.1
Uncharacterized protein (544 aa)
     
  0.813
Solyc09g007670.2.1
Uncharacterized protein (550 aa)
     
  0.813
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
      0.624
Solyc06g009650.2.1
Uncharacterized protein (778 aa)
     
   
  0.467
Solyc01g079490.2.1
Uncharacterized protein (777 aa)
     
   
  0.467
Solyc08g067040.2.1
Uncharacterized protein (764 aa)
     
  0.461
Solyc10g084670.1.1
Eukaryotic translation initiation factor 3 subunit 10 ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (943 aa)
       
      0.443
Solyc09g010460.2.1
Eukaryotic translation initiation factor 3 subunit 10 ; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (1016 aa)
       
      0.443
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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