STRINGSTRING
Solyc08g028890.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g028890.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g028890.1.1Uncharacterized protein (61 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
   
  0.999
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
   
  0.999
Solyc10g080160.1.1
Uncharacterized protein (385 aa)
   
  0.998
Solyc04g079790.2.1
Uncharacterized protein (237 aa)
   
  0.998
Solyc04g049260.1.1
Uncharacterized protein (166 aa)
   
  0.998
Solyc11g008710.1.1
Uncharacterized protein (502 aa)
   
  0.997
Solyc09g082520.2.1
40S ribosomal protein S3a (260 aa)
   
  0.996
Solyc06g072490.2.1
40S ribosomal protein S3a (261 aa)
   
  0.996
Solyc03g097900.2.1
40S ribosomal protein S3a (261 aa)
   
  0.996
Solyc10g006030.2.1
Uncharacterized protein (188 aa)
   
  0.996
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (20%) [HD]