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STRINGSTRING
Solyc08g042020.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g042020.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g042020.1.1annotation not available (203 aa)    
Predicted Functional Partners:
sfr2
Putative beta-glycosidase ; Belongs to the glycosyl hydrolase 1 family (642 aa)
   
   
  0.566
Solyc03g118640.2.1
Uncharacterized protein; Ketose-bisphosphate aldolase class-II family protein (1343 aa)
         
  0.445
Solyc01g074060.1.1
annotation not available (168 aa)
   
     
  0.424
100037732
Uricase; Catalyzes the oxidation of uric acid to 5- hydroxyisourate, which is further processed to form (S)-allantoin; Belongs to the uricase family (307 aa)
     
   
  0.422
Solyc01g074050.1.1
annotation not available (101 aa)
   
          0.419
101265470
annotation not available (93 aa)
   
          0.419
101253420
Transthyretin-like protein (335 aa)
           
  0.418
Solyc09g083410.2.1
Uncharacterized protein; Ureidoglycolate amidohydrolase (467 aa)
           
  0.414
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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