STRINGSTRING
Solyc08g043180.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g043180.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g043180.2.1Uncharacterized protein (211 aa)    
Predicted Functional Partners:
Solyc03g114050.2.1
Uncharacterized protein (182 aa)
     
  0.933
Solyc08g083350.2.1
Uncharacterized protein (217 aa)
     
  0.901
Solyc02g082500.1.1
Uncharacterized protein (155 aa)
     
  0.901
Solyc05g009370.2.1
Uncharacterized protein (271 aa)
     
    0.884
Solyc02g081310.2.1
Uncharacterized protein (282 aa)
     
    0.884
Solyc08g075850.2.1
Uncharacterized protein (159 aa)
     
    0.873
Solyc07g063960.2.1
Uncharacterized protein (189 aa)
     
    0.873
Solyc11g066410.1.1
Uncharacterized protein (192 aa)
     
    0.866
Solyc05g032880.2.1
Uncharacterized protein (224 aa)
     
    0.866
Solyc12g013990.1.1
Uncharacterized protein (398 aa)
     
  0.850
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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