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STRINGSTRING
Solyc08g044480.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g044480.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g044480.1.1annotation not available (139 aa)    
Predicted Functional Partners:
101259988
Cell cycle checkpoint control protein family (440 aa)
     
 
  0.967
101265192
Uncharacterized protein; RADIATION SENSITIVE 17 (599 aa)
     
 
  0.807
101262147
Uncharacterized protein; HhH-GPD base excision DNA repair family protein (476 aa)
       
 
  0.785
101249845
Uncharacterized protein; Restriction endonuclease, type II-like superfamily protein (953 aa)
     
   
  0.730
Solyc02g091120.2.1
DNA LIGASE 6 (1473 aa)
     
 
  0.716
101256634
Uncharacterized protein; Ataxia telangiectasia-mutated and RAD3-related (2728 aa)
       
 
  0.704
101267918
Uncharacterized protein; Replication factor C 2 (331 aa)
     
 
  0.673
Solyc08g015770.2.1
RING/U-box superfamily protein (290 aa)
           
  0.657
101245268
Uncharacterized protein; Homolog of X-ray repair cross complementing 3 (XRCC3) (285 aa)
     
 
  0.655
Solyc02g081520.2.1
Uncharacterized protein; Nijmegen breakage syndrome 1 (596 aa)
           
  0.644
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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