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Solyc08g045850.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g045850.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
Solyc08g045850.2.1Uncharacterized protein; Pentatricopeptide repeat (PPR-like) superfamily protein (699 aa)    
Predicted Functional Partners:
Solyc01g095680.2.1
annotation not available (206 aa)
     
   
  0.938
Solyc10g080040.1.1
Uncharacterized protein; LOCATED IN- mitochondrion; BEST Arabidopsis thaliana protein match is- Ribonuclease III family protein (TAIR-AT4G37510.1) (593 aa)
     
   
  0.936
101260010
Uncharacterized protein; RNA-binding CRS1 / YhbY (CRM) domain-containing protein (563 aa)
     
   
  0.934
101263737
Uncharacterized protein; DEAD box RNA helicase (RH3) (746 aa)
     
 
  0.929
101246778
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (400 aa)
     
      0.863
101251873
Uncharacterized protein; High chlorophyll fluorescent 107 (681 aa)
     
   
  0.861
101245558
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1048 aa)
     
        0.861
101244612
annotation not available (883 aa)
     
   
  0.860
101254504
Uncharacterized protein; Translation initiation factor 2, small GTP-binding protein (1010 aa)
     
 
  0.853
Solyc01g097860.2.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown functi /.../1517 (InterPro-IPR010903); Has 276 Blast hits to 275 proteins in 83 species- Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source- NCBI BLink) (288 aa)
     
        0.816
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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