• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc08g059800.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g059800.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g059800.2.1annotation not available (459 aa)    
Predicted Functional Partners:
101266503
TPX2 (targeting protein for Xklp2) protein family (177 aa)
           
  0.745
101263791
annotation not available (567 aa)
     
   
  0.707
101055514
Hop-interacting protein THI016 (581 aa)
     
   
  0.707
101255773
Unknown protein; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF773 (InterPro-IPR008491); Has 365 Blast hits to 359 proteins in 109 species- Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes /.../source- NCBI BLink) (564 aa)
           
  0.684
Solyc10g086170.1.1
Uncharacterized protein; Amidase 1 (426 aa)
           
  0.649
101260594
Uncharacterized protein; Galactose oxidase/kelch repeat superfamily protein (492 aa)
           
  0.608
101247472
annotation not available (1846 aa)
           
  0.583
Solyc01g111530.2.1
annotation not available (1860 aa)
           
  0.583
Solyc12g017310.1.1
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity (258 aa)
           
  0.554
Solyc07g066650.2.1
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity (260 aa)
           
  0.554
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (12%) [HD]