STRINGSTRING
Solyc08g062280.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g062280.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g062280.1.1Uncharacterized protein (182 aa)    
Predicted Functional Partners:
Solyc11g069010.1.1
Uncharacterized protein (518 aa)
   
   
 
0.809
Solyc10g024320.1.1
Uncharacterized protein (591 aa)
       
      0.533
Solyc10g024310.1.1
Uncharacterized protein (117 aa)
       
      0.533
Solyc10g024300.1.1
Uncharacterized protein (232 aa)
       
      0.533
Solyc08g077440.2.1
Lon protease homolog 2, peroxisomal ; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import (877 aa)
       
      0.533
Solyc06g062660.2.1
Beta-galactosidase (709 aa)
 
     
  0.479
Solyc01g099090.2.1
Uncharacterized protein (969 aa)
 
     
  0.437
Solyc05g054710.2.1
Beta-hexosaminidase 2 (552 aa)
 
   
  0.405
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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