STRINGSTRING
Solyc08g062780.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g062780.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g062780.1.1Uncharacterized protein (596 aa)    
Predicted Functional Partners:
Solyc07g006060.2.1
Uncharacterized protein (246 aa)
       
 
  0.691
Solyc04g008420.1.1
Uncharacterized protein (678 aa)
     
 
  0.612
Solyc03g059200.1.1
Uncharacterized protein (263 aa)
     
   
  0.608
Solyc10g009390.2.1
Uncharacterized protein (556 aa)
     
   
  0.509
Solyc11g018600.1.1
Uncharacterized protein (256 aa)
     
   
  0.492
Solyc07g053460.2.1
Uncharacterized protein (342 aa)
     
   
  0.434
Solyc01g009590.2.1
Protein 108 (102 aa)
     
   
  0.431
Solyc02g088710.2.1
Uncharacterized protein (553 aa)
     
   
  0.421
Ms10(35)
Transcription factor DYSFUNCTIONAL TAPETUM 1 (209 aa)
     
 
0.413
Solyc09g098420.1.1
Uncharacterized protein (1270 aa)
           
  0.403
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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