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STRINGSTRING
Solyc08g062970.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g062970.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g062970.1.1annotation not available (139 aa)    
Predicted Functional Partners:
101254347
annotation not available (543 aa)
   
 
  0.714
Solyc04g016010.2.1
annotation not available (537 aa)
   
 
  0.714
101268063
Glutaredoxin family protein (143 aa)
           
  0.586
101266480
Uncharacterized protein; Ubiquitin-specific protease 24; Belongs to the peptidase C19 family (534 aa)
     
   
  0.565
101257506
annotation not available (533 aa)
     
   
  0.565
101265642
Unknown protein; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF775 (InterPro-IPR008493); Has 285 Blast hits to 283 proteins in 133 species- Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes /.../source- NCBI BLink) (187 aa)
     
   
  0.514
101268382
RNI-like superfamily protein (420 aa)
           
  0.499
101245023
Protein of unknown function (DUF3411) (413 aa)
           
  0.499
101256709
annotation not available (380 aa)
           
  0.499
101263072
Uncharacterized protein; Microsomal glutathione s-transferase, putative (145 aa)
           
  0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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