STRINGSTRING
Solyc08g063010.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g063010.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g063010.2.1Uncharacterized protein (307 aa)    
Predicted Functional Partners:
Solyc00g042140.1.1
Annotation not available (399 aa)
     
  0.938
atpB
ATP synthase subunit beta, chloroplastic ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (609 aa)
     
  0.925
Solyc00g042130.1.1
Annotation not available (704 aa)
     
  0.923
Solyc12g062530.1.1
Uncharacterized protein (99 aa)
     
  0.870
Solyc12g042230.1.1
Uncharacterized protein (93 aa)
     
  0.870
Solyc07g062000.1.1
Uncharacterized protein (77 aa)
     
  0.870
Solyc07g021180.1.1
Uncharacterized protein (150 aa)
     
  0.870
Solyc05g008460.2.1
ATP synthase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane (557 aa)
     
  0.870
Solyc04g039850.1.1
Uncharacterized protein (139 aa)
     
  0.870
Solyc04g007550.2.1
ATP synthase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane (562 aa)
     
  0.870
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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