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Solyc08g065420.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g065420.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g065420.2.1Uncharacterized protein (559 aa)    
Predicted Functional Partners:
KN1
Homeotic protein knotted-1 ; Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5’-TGAC-3’ (355 aa)
       
 
0.599
T6
Homeobox protein knotted-1-like LET6 ; May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5’-TGAC- 3’ (354 aa)
       
 
0.593
Solyc01g110020.2.1
Uncharacterized protein (216 aa)
       
      0.583
Solyc04g028560.2.1
Uncharacterized protein (777 aa)
     
  0.528
Solyc03g111590.2.1
Uncharacterized protein (1252 aa)
     
  0.528
Solyc11g005690.1.1
Uncharacterized protein (1342 aa)
       
  0.515
Solyc11g067020.1.1
Histone deacetylase (430 aa)
       
  0.436
Solyc09g091440.2.1
Histone deacetylase (498 aa)
       
  0.436
Solyc06g071680.2.1
Histone deacetylase (471 aa)
       
  0.436
Solyc03g112410.1.1
Histone deacetylase (449 aa)
       
  0.436
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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