STRINGSTRING
Solyc08g065630.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc08g065630.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc08g065630.1.1Uncharacterized protein (599 aa)    
Predicted Functional Partners:
Solyc09g098390.2.1
Uncharacterized protein (355 aa)
     
      0.823
Solyc02g085420.2.1
Uncharacterized protein (478 aa)
     
      0.823
Solyc06g048730.2.1
Uroporphyrinogen decarboxylase (388 aa)
 
   
  0.768
Solyc03g005080.2.1
Uncharacterized protein (501 aa)
   
 
  0.767
Solyc01g079090.2.1
Uncharacterized protein (558 aa)
   
 
  0.767
Solyc10g007320.2.1
Uroporphyrinogen decarboxylase (420 aa)
 
   
  0.764
Solyc02g090910.2.1
Uncharacterized protein (376 aa)
     
 
  0.711
Solyc08g069030.2.1
Delta-aminolevulinic acid dehydratase (430 aa)
   
   
  0.662
Solyc07g066470.2.1
Uncharacterized protein (365 aa)
   
   
  0.655
Solyc11g062010.1.1
Uncharacterized protein (2667 aa)
     
 
  0.594
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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