Solyc08g065690.1.1 protein (Solanum lycopersicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

Node Content

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Solyc08g065690.1.1

Uncharacterized protein (463 aa)

Predicted Functional Partners:

Solyc09g059960.2.1

0.924

Solyc02g067820.2.1

0.876

Solyc09g059600.2.1

0.865

Solyc08g080420.2.1

0.759

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc02g067820.2.1	Solyc08g065690.1.1	Uncharacterized protein	Uncharacterized protein	0.876
Solyc02g067820.2.1	Solyc08g080420.2.1	Uncharacterized protein	Uncharacterized protein	0.992
Solyc02g067820.2.1	Solyc09g059600.2.1	Uncharacterized protein	Uncharacterized protein	0.994
Solyc02g067820.2.1	Solyc09g059960.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc08g065690.1.1	Solyc02g067820.2.1	Uncharacterized protein	Uncharacterized protein	0.876
Solyc08g065690.1.1	Solyc08g080420.2.1	Uncharacterized protein	Uncharacterized protein	0.759
Solyc08g065690.1.1	Solyc09g059600.2.1	Uncharacterized protein	Uncharacterized protein	0.865
Solyc08g065690.1.1	Solyc09g059960.2.1	Uncharacterized protein	Uncharacterized protein	0.924
Solyc08g080420.2.1	Solyc02g067820.2.1	Uncharacterized protein	Uncharacterized protein	0.992
Solyc08g080420.2.1	Solyc08g065690.1.1	Uncharacterized protein	Uncharacterized protein	0.759
Solyc08g080420.2.1	Solyc09g059600.2.1	Uncharacterized protein	Uncharacterized protein	0.992
Solyc08g080420.2.1	Solyc09g059960.2.1	Uncharacterized protein	Uncharacterized protein	0.992
Solyc09g059600.2.1	Solyc02g067820.2.1	Uncharacterized protein	Uncharacterized protein	0.994
Solyc09g059600.2.1	Solyc08g065690.1.1	Uncharacterized protein	Uncharacterized protein	0.865
Solyc09g059600.2.1	Solyc08g080420.2.1	Uncharacterized protein	Uncharacterized protein	0.992
Solyc09g059600.2.1	Solyc09g059960.2.1	Uncharacterized protein	Uncharacterized protein	0.998
Solyc09g059960.2.1	Solyc02g067820.2.1	Uncharacterized protein	Uncharacterized protein	0.996
Solyc09g059960.2.1	Solyc08g065690.1.1	Uncharacterized protein	Uncharacterized protein	0.924
Solyc09g059960.2.1	Solyc08g080420.2.1	Uncharacterized protein	Uncharacterized protein	0.992
Solyc09g059960.2.1	Solyc09g059600.2.1	Uncharacterized protein	Uncharacterized protein	0.998

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

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